Isolation and Molecular Characterization of Indigenous Entomopathogenic Fungi from the Agricultural and Highland Ecosystems of Pakistan for Sustainable Pest Management
Keywords:
Entomopathogenic fungus, Biological control, Isolation, Molecular identification, ITS amplificationAbstract
Entomopathogenic fungus is the most practical alternative for insect pests in livestock and agriculture. The objectives of this study were to isolate and identify morphological and molecular strains of entomopathogenic fungi from agricultural and hilly regions of Pakistan to develop insect biocontrol technologies. Three isolates, Beauveria bassiana, Trichoderma longibrachiatum, and Purpureocillium lilacinum, were isolated from Balochistan, Punjab, and KPK. These isolates were identified with the help of their distinctive morphological characteristics. Molecular identification was executed to further validate the results of the morphological analysis. The ITS amplification of each isolate was supported by phylogenetic analysis, which revealed that sequences clustered inside the clade of their respective species. These findings increase the knowledge of the diverse ecological zones of Pakistan and lay the groundwork for developing environmentally friendly microbiological solutions for biological pest management, which would make the environment more sustainable. The successful isolation and confirmation of these fungal species from different provinces also indicates their natural presence in varied climatic and soil conditions. This baseline information can support future studies focusing on formulation, application, and field evaluation of locally existing EPF.
References
Al-Rubaiey, W. L., & Al-Juboory, H. H. (2020). Molecular identification of Trichoderma longibrachiatum causing green mold in Pleurotus eryngii culture media. J. Plant Arch., 20(1), 181-184.
Anwar, W., Subhani, M. N., Haider, M. S., Shahid, A. A., Mushatq, H., Rehman, M. Z., . . . Javed, S. (2016). First record of Trichoderma longibrachiatum as entomopathogenic fungi against Bemisia tabaci in Pakistan. PJP, 28(2), 287-294.
Arifah, F., Aini, L. Q., & Muhibuddin, A. (2023). Molecular and morphological characterization of fungi isolated from nutmeg (Myristica fragrans) in North Sulawesi, Indonesia. Biodivers. J., 24(1).
Bakhshi, S., Eshghi, S., & Banihashemi, Z. (2023). Application of candidate endophytic fungi isolated from extreme desert adapted trees to mitigate the adverse effects of drought stress on maize (Zea mays L.). IJPPB, 202, 107961.
Bali, G. K., Singh, S. K., Maurya, D. K., Wani, F. J., & Pandit, R. S. (2022). Morphological and molecular identification of the entomopathogenic fungus Purpureocillium lilacinum and its virulence against Tuta absoluta (Meyrick)(Lepidoptera: Gelechiidae) larvae and pupae. J. EJBPC, 32(1), 86.
Bamisile, B. S., Siddiqui, J. A., Akutse, K. S., Ramos Aguila, L. C., & Xu, Y. (2021). General limitations to endophytic entomopathogenic fungi use as plant growth promoters, pests and pathogens biocontrol agents. J. Front. Plant Sci., 10(10), 2119.
Beemrote, A., Srinivasan, M., Jeyarani, S., Mohan Kumar, S., Kalaiselvi, T., Pravallika, P., & Singh, K. S. (2024). Isolation and Identification of Entomopathogenic Fungi from Soils of Manipur (NE India). Indian J. Agric. Res., 58(4).
Bich, G. A., Castrillo, M. L., Kramer, F. L., Villalba, L. L., & Zapata, P. D. (2021). Morphological and molecular identification of entomopathogenic fungi from agricultural and forestry crops. FLORAM, 28(2), e20180086.
Bint-e-Zahira, S., Khalid, A. N., Yousaf, N., Iqbal, M., Anwar, T., Qureshi, H., . . . Ansari, M. J. (2024). Exploring Trichoderma Species in Industrial Wastewater: Morphological and Molecular Insights from Isolates. J. Life, 14(6), 750.
Coates, B. S., Hellmich, R. L., & Lewis, L. C. (2002). Allelic variation of a Beauveria bassiana (Ascomycota: Hypocreales) minisatellite is independent of host range and geographic origin. J. Genome, 45(1), 125-132.
Dong, T., Zhang, B., Jiang, Y., & Hu, Q. (2016). Isolation and classification of fungal whitefly entomopathogens from soils of Qinghai-Tibet Plateau and Gansu Corridor in China. J PLoS One, 11(5), e0156087.
Faryal, K., & Ayaz, M. Weather and Wheat Crop Development in Northwest Baluchistan (Quetta).
Gandarilla-Pacheco, F. L., de Luna-Santillana, E. d. J., Alemán-Huerta, M. E., Pérez-Rodríguez, R., & Quintero-Zapata, I. (2021). Isolation of native strains of entomopathogenic fungi from agricultural soils of northeastern Mexico and their virulence on Spodoptera exigua (Lepidoptera: Noctuidae). J. Fla Entomol., 104(4), 245-252.
Gardes, M., & Bruns, T. D. (1993). ITS primers with enhanced specificity for basidiomycetes‐application to the identification of mycorrhizae and rusts. J. Mol. Ecol., 2(2), 113-118.
Gill, H. K., & Garg, H. (2014). Pesticide: environmental impacts and management strategies. J. Pest. Sci., 8(187), 10-5772.
Hatting, J. L., Humber, R. A., Poprawski, T. J., & Miller, R. M. (1999). A survey of fungal pathogens of aphids from South Africa, with special reference to cereal aphids. J. Biocontrol, 16(1), 1-12.
Hebert, P. D., Cywinska, A., Ball, S. L., & DeWaard, J. R. (2003). Biological identifications through DNA barcodes. Proc. Roy. Soc. London, Ser. B, Biol. Sci., 270(1512), 313-321.
Humber, R. A. (2012). Identification of entomopathogenic fungi. J. Invertebr. Pathol., 2, 151-187.
Hussein, K. A., Abdel-Rahman, M. A., Abdel-Mallek, A. Y., El-Maraghy, S. S., & Joo, J. H. (2010). Climatic factors interference with the occurrence of Beauveria bassiana and Metarhizium anisopliae in cultivated soil. AJB, 9(45), 7674-7682.
Jamil, H. M. A., Ahmed, A., Irshad, U., Al-Ghamdi, A. A., Elshikh, M. S., Alaraidh, I. A., . . . Ahmad, R. (2020). Identification and inoculation of fungal strains from Cedrus deodara rhizosphere involve in growth and alleviation of high nitrogen stress. Saudi J. Biol. Sci., 27(1), 524-534.
Khan, A., Khan, M., & Khan, S. A. (2023). A Critical Analysis of Pakistan's Budget 2023-24: The Fiscal Challenges. BBE, 12(3).
Khan, M., & Tanaka, K. (2023). Purpureocillium lilacinum for plant growth promotion and biocontrol against root-knot nematodes infecting eggplant. PLoS One, 18(3), e0283550.
Kidanu, S., & Hagos, L. (2020). Entomopathogenic fungi as a biological pest management option: A review. J Int. J. Res. Stud. Agric. Sci, 6, 1-10.
Lestari, A. S. (2016). Isolation and pathogenicity of naturally occurring entomopathogenic fungi to clover root borer (Coleoptera: Curculionidae: Scolytinae), a pest of red clover seed crops.
Lücking, R., Aime, M. C., Robbertse, B., Miller, A. N., Ariyawansa, H. A., Aoki, T., . . . Geiser, D. M. (2020). Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding? J. IMA fungus, 11(1), 14.
Mantzoukas, S., & Eliopoulos, P. A. (2020). Endophytic entomopathogenic fungi: A valuable biological control tool against plant pests. J. Appl. Sci., 10(1), 360.
Medo, J., Medová, J., Michalko, J., & Cagáň, Ľ. (2021). Variability in virulence of Beauveria spp. soil isolates against Ostrinia nubilalis. J. Appl. Entomol., 145(1-2), 92-103.
Meyling, N. V., & Eilenberg. (2006). Occurrence and distribution of soil borne entomopathogenic fungi within a single organic agroecosystem. Agric. Ecosyst. Environ., 113(1-4), 336-341.
Monpierre, L., Aït-Ammar, N., Valsecchi, I., Normand, A.-C., Guitard, J., Riat, A., . . . Hasseine, L. (2022). Species identification and in vitro antifungal susceptibility of Paecilomyces/Purpureocillium species isolated from clinical respiratory samples: a multicenter study. J. Fungus, 8(7), 684.
NV, M. (2022). Characterization and biocontrol potential of Trichoderma longibrachiatum TL-RD-01 against plant pathogens. Arch. Phytopathol. Pflanzenschutz, 55(18), 2111-2129.
Orgiazzi, A., Dunbar, M. B., Panagos, P., de Groot, G. A., & Lemanceau, P. (2015). Soil biodiversity and DNA barcodes: opportunities and challenges. J. Soil Biol. Biochem., 80, 244-250.
Punia, G., Tondan, N., Kumar, A., & Prasad, C. J. P. I. (2019). Identification and molecular characterization of an isolate of entomopathogenic fungus Beauveria bassiana from Meerut (UP, India) using RAPD-PCR. 8(2), 459-463.
Rao, N., Lawson, E. T., Raditloaneng, W. N., Solomon, D., Angula, M. N. J. C., & Development. (2019). Gendered vulnerabilities to climate change: insights from the semi-arid regions of Africa and Asia. J. Clim. Dev., 11(1), 14-26.
Raza, M., Cai, L., Abbasi, M. W., Hafeez, R., Tariq, M., Kirk, P. M., & Wijayawardene, N. (2022). The first updated checklist of novel fungi in Pakistan (1947–2021). MycoAsia-J. Mod. Mycol., 3, 72.
Riaz, M., Chen, W.-H., Kafle, L., & Tseng, M.-N. (2024). Morphological and molecular characterization of Purpureocillium lilacinum along with its biopesticidal effect against fall armyworm (Spodoptera frugiperda) in Southern Taiwan. J. EJBPC, 34(1), 60.
Saitou, N., Nei, M. J. M. b., & evolution. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. J. Mol. Biol. Evol., 4(4), 406-425.
Samuels, G. J., Ismaiel, A., Mulaw, T. B., Szakacs, G., Druzhinina, I. S., Kubicek, C. P., & Jaklitsch, W. M. (2012). The Longibrachiatum Clade of Trichoderma: a revision with new species. J. Fungal Divers., 55, 77-108.
Senthilkumar, M., Anandham, R., & Krishnamoorthy, R. (2020). Paecilomyces. In Beneficial microbes in agro-ecology (pp. 793-808): Elsevier.
Shahid, M., Srivastava, M., Sharma, A., Singh, A., Pandey, S., Kumar, V., . . . Rastogi, S. (2013). Molecular characterization of Trichoderma longibrachiatum 21PP isolated from rhizospheric soil based on universal ITS primers. Afr. J. Microbiol. Res., 71, 4902-4906.
Sun, B.-D., Yu, H.-y., Chen, A. J., & Liu, X.-Z. (2008). Insect-associated fungi in soils of field crops and orchards. J. Crop Prot., 27(11), 1421-1426.
Taiwo, A. M. J. C. (2019). A review of environmental and health effects of organochlorine pesticide residues in Africa. J. Chemosphere, 220, 1126-1140.
Tamura, K., & Nei, M. (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. J. Mol. Biol. Evol., 10(3), 512-526.
Tamura, K., Stecher, G., Kumar, S. J. M. b., & evolution. (2021). MEGA11: molecular evolutionary genetics analysis version 11. J. Mol. Biol. Evol., 38(7), 3022-3027.
Tirosh-Levy, S., Gottlieb, Y., Apanaskevich, D. A., Mumcuoglu, K. Y., & Steinman, A. (2018). Species distribution and seasonal dynamics of equine tick infestation in two Mediterranean climate niches in Israel. J. Parasit. Vectors., 11, 1-10.
Toromade, A. S., Soyombo, D. A., Kupa, E., & Ijomah, T. I. (2024). Reviewing the impact of climate change on global food security: Challenges and solutions. IJARSS, 6(7), 1403-1416.
Torres, M., & White, J. (2009). Clavicipitaceae: free-living and saprotrophs to plant endophytes. J. Gen. Microbiol., 1, 422-430.
Tuininga, A. R., Miller, J. L., Morath, S. U., Daniels, T. J., Falco, R. C., Marchese, M., . . . Stafford, K. C. (2014). Isolation of entomopathogenic fungi from soils and Ixodes scapularis (Acari: Ixodidae) ticks: prevalence and methods. J. Med. Entomol., 46(3), 557-565.
Ullah, S., Raza, A. B. M., Alkafafy, M., Sayed, S., Hamid, M. I., Majeed, M. Z., . . . Asim, M. (2022). Isolation, identification and virulence of indigenous entomopathogenic fungal strains against the peach-potato aphid, Myzus persicae Sulzer (Hemiptera: Aphididae), and the fall armyworm, Spodoptera frugiperda (JE Smith)(Lepidoptera: Noctuidae). EJBPC, 32(1), 1-11.
Usman, M., Wakil, W., Piñero, J. C., Wu, S., Toews, M. D., & Shapiro-Ilan, D. I. (2021). Evaluation of locally isolated entomopathogenic fungi against multiple life stages of Bactrocera zonata and Bactrocera dorsalis (Diptera: Tephritidae): Laboratory and field study. J Microorganisms, 9(8), 1791.
Utomo, C., Pardede, D., & Salam, A. (1988). Beauveria sp., parasite of larvae of the cocoa red borer Zeuzera coffeae Nietn.
Wakil, W., Ghazanfar, M. U., Riasat, T., Kwon, Y. J., Qayyum, M. A., & Yasin, M. (2013). Occurrence and diversity of entomopathogenic fungi in cultivated and uncultivated soils in P akistan. J. Entomol. Res., 43(1), 70-78.
Wakil, W., Usman Ghazanfar, M., & Yasin, M. (2014). Naturally occurring entomopathogenic fungi infecting stored grain insect species in Punjab, Pakistan. J. Insect Sci., 14(1), 182.
Wang, L., Keyhani, N. O., Xia, Y., & Xie, J. (2024). The potential and limitations of entomopathogenic fungi as biocontrol agents for insect pest management. J Entomol Gen, 44, 797-811.
White, T. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. J PCR Protocols: A guide to methods applications/Academic Press, Inc.
Published
How to Cite
Issue
Section
License
Copyright (c) 2022 Journal of Wildlife and Biodiversity

This work is licensed under a Creative Commons Attribution 4.0 International License.